STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI44205.1Esterase, PHB depolymerase family; Manually curated. (372 aa)    
Predicted Functional Partners:
SHJ27289.1
Right handed beta helix region.
   
   0.598
SHI59669.1
Polyhydroxyalkanoate synthase.
  
  
 0.593
SHI59641.1
Poly(3-hydroxybutyrate) depolymerase.
 
  
 0.589
SHI44155.1
Hypothetical protein.
       0.486
SHI44181.1
Omega-6 fatty acid desaturase (delta-12 desaturase).
       0.486
SHI56999.1
Hypothetical protein.
  
     0.463
Your Current Organism:
Wenxinia saemankumensis
NCBI taxonomy Id: 1447782
Other names: CECT 8456, DSM 100565, KCTC 32548, W. saemankumensis, Wenxinia saemankumensis Park et al. 2014, Wenxinia sp. S-22, strain S-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.