SHI51173.1 protein (Wenxinia saemankumensis)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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co-expression

protein homology

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[Homology]

Score

SHI51173.1

Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (336 aa)

Predicted Functional Partners:

SHI51306.1

0.982

SHJ25978.1

0.955

SHI66155.1

0.949

SHI39265.1

0.942

SHI30753.1

0.937

SHJ14984.1

0.937

SHI51201.1

0.916

SHI65666.1

0.910

SHI43388.1

0.908

SHI34362.1

0.859

Your Current Organism:

Wenxinia saemankumensis

NCBI taxonomy Id: 1447782
Other names: CECT 8456, DSM 100565, KCTC 32548, W. saemankumensis, Wenxinia saemankumensis Park et al. 2014, Wenxinia sp. S-22, strain S-22

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHI30753.1	SHI51173.1	SAMN05444417_0183	SAMN05444417_0807	Peptide/nickel transport system permease protein.	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.937
SHI30753.1	SHI51201.1	SAMN05444417_0183	SAMN05444417_0808	Peptide/nickel transport system permease protein.	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.878
SHI34362.1	SHI51173.1	SAMN05444417_0368	SAMN05444417_0807	Peptide/nickel transport system permease protein.	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.859
SHI34362.1	SHI51201.1	SAMN05444417_0368	SAMN05444417_0808	Peptide/nickel transport system permease protein.	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.833
SHI39265.1	SHI51173.1	SAMN05444417_0591	SAMN05444417_0807	Peptide/nickel transport system permease protein.	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.942
SHI39265.1	SHI51201.1	SAMN05444417_0591	SAMN05444417_0808	Peptide/nickel transport system permease protein.	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.940
SHI43388.1	SHI51173.1	SAMN05444417_0763	SAMN05444417_0807	Peptide/nickel transport system permease protein.	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.908
SHI43388.1	SHI51201.1	SAMN05444417_0763	SAMN05444417_0808	Peptide/nickel transport system permease protein.	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.790
SHI51173.1	SHI30753.1	SAMN05444417_0807	SAMN05444417_0183	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.937
SHI51173.1	SHI34362.1	SAMN05444417_0807	SAMN05444417_0368	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.859
SHI51173.1	SHI39265.1	SAMN05444417_0807	SAMN05444417_0591	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.942
SHI51173.1	SHI43388.1	SAMN05444417_0807	SAMN05444417_0763	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.908
SHI51173.1	SHI51201.1	SAMN05444417_0807	SAMN05444417_0808	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.916
SHI51173.1	SHI51306.1	SAMN05444417_0807	SAMN05444417_0812	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.982
SHI51173.1	SHI65666.1	SAMN05444417_0807	SAMN05444417_1417	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Dipeptide transport system permease protein.	0.910
SHI51173.1	SHI66155.1	SAMN05444417_0807	SAMN05444417_1437	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.949
SHI51173.1	SHJ14984.1	SAMN05444417_0807	SAMN05444417_2999	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide transport system permease protein.	0.937
SHI51173.1	SHJ25978.1	SAMN05444417_0807	SAMN05444417_3379	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.955
SHI51201.1	SHI30753.1	SAMN05444417_0808	SAMN05444417_0183	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.878
SHI51201.1	SHI34362.1	SAMN05444417_0808	SAMN05444417_0368	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.833

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Network Stats

number of nodes:

4

number of edges:

4

average node degree:

2

avg. local clustering coefficient:

0.833

expected number of edges:

3

PPI enrichment p-value:

0.331

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006418

tRNA aminoacylation for protein translation

6 of 18

1.32

1.41

6.91e-05

GO:0006399

tRNA metabolic process

7 of 28

1.2

1.27

4.81e-05

GO:0006450

Regulation of translational fidelity

3 of 5

1.58

1.21

0.0021

GO:0006412

Translation

9 of 85

0.82

0.76

6.91e-05

GO:0034641

Cellular nitrogen compound metabolic process

10 of 200

0.5

0.41

0.00065

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0140101

Catalytic activity, acting on a tRNA

10 of 27

1.37

2.31

1.08e-10

GO:0016874

Ligase activity

9 of 30

1.27

1.88

7.28e-09

GO:0004812

aminoacyl-tRNA ligase activity

6 of 18

1.32

1.55

1.26e-05

GO:0050567

glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity

3 of 3

1.8

1.54

0.00061

GO:0050566

asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity

2 of 2

1.8

1.0

0.0106

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:274

Ligase, and Cytokinesis

8 of 22

1.36

1.96

8.04e-08

CL:301

Carbon-nitrogen ligase activity, with glutamine as amido-N-donor, and Cytokinesis

4 of 7

1.55

1.48

0.00032

CL:277

Aminoacyl-tRNA synthetase

3 of 10

1.27

0.79

0.0136

CL:70

Gene expression, and Infection with Mycobacterium tuberculosis

10 of 124

0.7

0.64

2.86e-05

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00970

Aminoacyl-tRNA biosynthesis

10 of 27

1.37

2.37

2.60e-11

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0030956

glutamyl-tRNA(Gln) amidotransferase complex

2 of 2

1.8

0.72

0.0405

GOCC:0005737

Cytoplasm

8 of 128

0.59

0.41

0.0117

GOCC:0005622

Intracellular

10 of 226

0.44

0.33

0.0117

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0436

Ligase

9 of 24

1.37

2.24

7.26e-10

KW-0648

Protein biosynthesis

10 of 33

1.28

2.02

2.13e-10

KW-0030

Aminoacyl-tRNA synthetase

6 of 17

1.35

1.67

4.06e-06

KW-0067

ATP-binding

9 of 55

1.01

1.18

3.17e-07

KW-0963

Cytoplasm

6 of 57

0.82

0.65

0.0018

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR045864

Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL)

4 of 10

1.4

0.95

0.0065

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