STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI66850.1Farnesyl-diphosphate farnesyltransferase. (284 aa)    
Predicted Functional Partners:
SHI66909.1
Phytoene desaturase.
 
 
 0.993
SHI66934.1
Phytoene desaturase.
 
 
 0.993
SHI66879.1
Squalene synthase HpnC.
   
0.987
SHI66827.1
Squalene-associated FAD-dependent desaturase.
 
 0.986
SHI99740.1
Farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.948
SHI82252.1
Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.919
SHI66981.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
 
     0.860
SHI29961.1
Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.851
SHI29580.1
Phytoene/squalene synthetase.
    
  0.850
SHI66958.1
1-acyl-sn-glycerol-3-phosphate acyltransferase.
 
  
 0.844
Your Current Organism:
Wenxinia saemankumensis
NCBI taxonomy Id: 1447782
Other names: CECT 8456, DSM 100565, KCTC 32548, W. saemankumensis, Wenxinia saemankumensis Park et al. 2014, Wenxinia sp. S-22, strain S-22
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