STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI82097.1DNA-binding transcriptional regulator, CsgD family. (170 aa)    
Predicted Functional Partners:
SHI82124.1
Cytochrome b.
     0.964
SHI82142.1
Peptidase propeptide and YPEB domain-containing protein.
       0.774
SHI34497.1
Hypothetical protein.
  
 
 0.500
SHI57512.1
N-acyl-L-homoserine lactone synthetase; Belongs to the autoinducer synthase family.
  
 
 0.500
SHI90228.1
Acyl homoserine lactone synthase.
  
 
 0.500
SHI85380.1
Autoinducer binding domain-containing protein.
  
  0.485
SHJ24737.1
Nucleotide-binding universal stress protein, UspA family.
  
     0.472
SHI82166.1
Hypothetical protein.
       0.420
SHJ03137.1
Acyl transferase domain-containing protein.
      
 0.410
gloB
Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
    
   0.407
Your Current Organism:
Wenxinia saemankumensis
NCBI taxonomy Id: 1447782
Other names: CECT 8456, DSM 100565, KCTC 32548, W. saemankumensis, Wenxinia saemankumensis Park et al. 2014, Wenxinia sp. S-22, strain S-22
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