STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ02404.1Invasion protein IalB, involved in pathogenesis. (181 aa)    
Predicted Functional Partners:
SHJ02452.1
Hypothetical protein.
 
    
0.795
SHJ02433.1
Hypothetical protein.
 
    
0.792
SHJ04134.1
Predicted lipid-binding transport protein, Tim44 family.
  
     0.729
SHI41032.1
Hypothetical protein.
  
     0.667
SHI59297.1
Transcriptional regulator, MarR family.
  
     0.650
SHJ04718.1
HemY protein.
  
     0.648
SHI58520.1
TIGR02300 family protein.
  
    0.614
SHI61014.1
DnaJ domain-containing protein.
  
     0.590
rlmN
23S rRNA m(2)A-2503 methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.
       0.589
SHI52861.1
Protein of unknown function.
  
     0.558
Your Current Organism:
Wenxinia saemankumensis
NCBI taxonomy Id: 1447782
Other names: CECT 8456, DSM 100565, KCTC 32548, W. saemankumensis, Wenxinia saemankumensis Park et al. 2014, Wenxinia sp. S-22, strain S-22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.