STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHJ16628.1Iron-regulated ABC transporter membrane component SufB. (533 aa)    
Predicted Functional Partners:
SHJ16744.1
Fe-S cluster assembly ATP-binding protein.
 
 0.999
SHJ16763.1
Fe-S cluster assembly protein SufD.
 
0.999
SHJ16838.1
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.998
SHI68207.1
FeS assembly SUF system protein.
   
 0.956
SHI68135.1
Iron-sulfur cluster assembly protein; Belongs to the HesB/IscA family.
  
 
 0.936
SHJ16067.1
Selenocysteine lyase/Cysteine desulfurase.
 
 
 0.906
SHI37308.1
Cysteine desulfuration protein SufE.
 
 
 0.878
SHI30190.1
NifU homolog involved in Fe-S cluster formation.
  
  
 0.874
SHJ16697.1
Uncharacterized conserved protein YbjQ, UPF0145 family; Belongs to the UPF0145 family.
  
  
 0.862
SHJ16784.1
Hypothetical protein.
     
 0.856
Your Current Organism:
Wenxinia saemankumensis
NCBI taxonomy Id: 1447782
Other names: CECT 8456, DSM 100565, KCTC 32548, W. saemankumensis, Wenxinia saemankumensis Park et al. 2014, Wenxinia sp. S-22, strain S-22
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