STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2T2N690Pectate lyase. (250 aa)    
Predicted Functional Partners:
A0A2T2N5I8
Uncharacterized protein; Belongs to the complex I LYR family.
    
 0.664
A0A2T2NYT7
Uncharacterized protein.
   
   0.658
A0A2T2N5A1
Pectate lyase E.
  
  
 
0.652
A0A2T2P3Z4
Pectate lyase-like protein.
  
  
 
0.650
A0A2T2NEZ4
Uncharacterized protein.
    
 0.648
A0A2T2N4Z5
GDPD-domain-containing protein.
    
  0.628
A0A2T2P6N7
GDPD-domain-containing protein.
    
  0.628
A0A2T2PD29
Glycerophosphoryl diester phosphodiesterase.
    
  0.628
A0A2T2P4V8
Ribosomal protein L2.
   
 
 0.621
A0A2T2NIU3
26S proteasome-like protein regulatory subunit.
    
  0.613
Your Current Organism:
Corynespora cassiicola
NCBI taxonomy Id: 1448308
Other names: C. cassiicola Philippines, Corynespora cassiicola INRA-Clermont Ferrand, Corynespora cassiicola Philippines
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.