A0A2T2NQK0 protein (Corynespora cassiicola) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Coexpression

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[Homology]

Score

A0A2T2NQK0

Uncharacterized protein. (156 aa)

Predicted Functional Partners:

A0A2T2NSQ1

0.824

A0A2T2P2C1

0.743

A0A2T2P5Z4

0.512

A0A2T2NAU5

0.511

A0A2T2N5G8

0.510

A0A2T2P2A5

0.510

A0A2T2P5J3

0.510

A0A2T2N1Y7

0.509

A0A2T2PB45

0.509

A0A2T2N6T2

0.507

Your Current Organism:

Corynespora cassiicola

NCBI taxonomy Id: 1448308
Other names: C. cassiicola Philippines, Corynespora cassiicola INRA-Clermont Ferrand, Corynespora cassiicola Philippines

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2T2N1Y7	A0A2T2N6T2	37S ribosomal protein Mrp17.	L51_S25_CI-B8 domain-containing protein.	0.999
A0A2T2N1Y7	A0A2T2NAU5	37S ribosomal protein Mrp17.	Ribosomal protein S2.	0.999
A0A2T2N1Y7	A0A2T2NQK0	37S ribosomal protein Mrp17.	Uncharacterized protein.	0.509
A0A2T2N1Y7	A0A2T2P2A5	37S ribosomal protein Mrp17.	Uncharacterized protein.	0.999
A0A2T2N1Y7	A0A2T2P5J3	37S ribosomal protein Mrp17.	Ribosomal protein S16.	0.999
A0A2T2N1Y7	A0A2T2P5Z4	37S ribosomal protein Mrp17.	Mitochondrial ribosomal protein-like protein subunit S18.	0.999
A0A2T2N1Y7	A0A2T2PB45	37S ribosomal protein Mrp17.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
A0A2T2N5G8	A0A2T2NQK0	Uncharacterized protein.	Uncharacterized protein.	0.510
A0A2T2N6T2	A0A2T2N1Y7	L51_S25_CI-B8 domain-containing protein.	37S ribosomal protein Mrp17.	0.999
A0A2T2N6T2	A0A2T2NAU5	L51_S25_CI-B8 domain-containing protein.	Ribosomal protein S2.	0.999
A0A2T2N6T2	A0A2T2NQK0	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein.	0.507
A0A2T2N6T2	A0A2T2P2A5	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein.	0.999
A0A2T2N6T2	A0A2T2P5J3	L51_S25_CI-B8 domain-containing protein.	Ribosomal protein S16.	0.999
A0A2T2N6T2	A0A2T2P5Z4	L51_S25_CI-B8 domain-containing protein.	Mitochondrial ribosomal protein-like protein subunit S18.	0.999
A0A2T2N6T2	A0A2T2PB45	L51_S25_CI-B8 domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
A0A2T2NAU5	A0A2T2N1Y7	Ribosomal protein S2.	37S ribosomal protein Mrp17.	0.999
A0A2T2NAU5	A0A2T2N6T2	Ribosomal protein S2.	L51_S25_CI-B8 domain-containing protein.	0.999
A0A2T2NAU5	A0A2T2NQK0	Ribosomal protein S2.	Uncharacterized protein.	0.511
A0A2T2NAU5	A0A2T2P2A5	Ribosomal protein S2.	Uncharacterized protein.	0.999
A0A2T2NAU5	A0A2T2P5J3	Ribosomal protein S2.	Ribosomal protein S16.	0.999

page 1 of 4

Network Stats

number of nodes:

11

number of edges:

49

average node degree:

8.91

avg. local clustering coefficient:

0.887

expected number of edges:

11

PPI enrichment p-value:

< 1.0e-16

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0009306

Protein secretion

6 of 90

1.6

2.07

4.54e-06

GO:0043711

Pilus organization

2 of 7

2.23

1.14

0.0074

GO:0048870

Cell motility

2 of 13

1.96

0.93

0.0170

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0046872

Metal ion binding

6 of 559

0.8

0.44

0.0447

GO:0043167

Ion binding

8 of 1012

0.67

0.42

0.0254

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005886

Plasma membrane

6 of 567

0.8

0.5

0.0193

GO:0016021

Integral component of membrane

7 of 931

0.65

0.42

0.0193

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:6911

Type II/IV secretion system protein, and GspF/PilC family

8 of 19

2.4

6.69

6.05e-15

CL:6913

Type II/IV secretion system protein, and T2SS_GspF/T4SS_PilC conserved site

7 of 11

2.58

6.66

4.72e-14

CL:6685

Mixed, incl. Pilin-like, and Bacterial secretion system

10 of 179

1.52

3.06

9.53e-13

CL:6687

Mixed, incl. Pilin-like, and Type II/IV secretion system protein

9 of 163

1.51

2.84

3.94e-11

CL:6915

T2SS_GspF/T4SS_PilC conserved site, and Type II secretion system protein GspE, N-terminal

2 of 5

2.37

1.2

0.0061

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03070

Bacterial secretion system

8 of 122

1.59

2.92

4.13e-10

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0044096

Type IV pilus

2 of 9

2.12

1.08

0.0092

GOCC:0071944

Cell periphery

8 of 471

1.0

1.02

2.82e-05

GOCC:0005886

Plasma membrane

7 of 389

1.03

1.0

0.00010

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00482

Type II secretion system (T2SS), protein F

6 of 7

2.71

5.86

5.47e-12

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR042094

Type II secretion system GspF domain superfamily

6 of 7

2.71

5.67

1.35e-11

IPR018076

Type II secretion system protein GspF domain

6 of 7

2.71

5.67

1.35e-11

IPR003004

GspF/PilC family

6 of 7

2.71

5.67

1.35e-11

IPR001992

T2SS_GspF/T4SS_PilC conserved site

3 of 3

2.77

2.44

3.24e-05

IPR006321

Pilus retraction protein PilT/PilU

2 of 5

2.37

0.93

0.0197

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