STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2T2NSP4Phytanoyl-CoA dioxygenase family protein. (309 aa)    
Predicted Functional Partners:
A0A2T2NFR6
WD40 repeat-like protein.
    
 0.755
A0A2T2P7J2
Uncharacterized protein.
 
      0.737
A0A2T2N607
TPR-like protein.
    
 0.655
A0A2T2NK03
RING-type domain-containing protein.
   
 
 0.617
A0A2T2NVU3
SH3 domain-containing protein.
     
 0.596
A0A2T2NTN1
PLP-dependent transferase.
    
 0.594
A0A2T2N683
Polyubiquitin.
    
  0.584
A0A2T2N963
Peroxisome assembly protein 12.
     
 0.584
A0A2T2NIQ3
Regulatory protein AraC.
    
 0.582
A0A2T2NMC8
RmlC-like cupin.
    
 0.582
Your Current Organism:
Corynespora cassiicola
NCBI taxonomy Id: 1448308
Other names: C. cassiicola Philippines, Corynespora cassiicola INRA-Clermont Ferrand, Corynespora cassiicola Philippines
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