STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2T2P2C7PARP-type domain-containing protein. (324 aa)    
Predicted Functional Partners:
A0A2T2N5Y5
DNA polymeras-like protein subunit delta-2.
    
 0.617
A0A2T2NL72
DNA polymerase.
   
 0.610
A0A2T2NG05
Uncharacterized protein.
    
 0.604
A0A2T2NU71
DNA repair endonuclease XPF.
    
 0.602
A0A2T2P9T9
WD40 repeat-like protein.
    
  0.556
A0A2T2NV80
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
  0.541
A0A2T2NB51
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.525
A0A2T2NDP0
Small nuclear ribonucleoprotein G.
    
  0.508
A0A2T2NL82
Small nuclear ribonucleoprotein Sm D2.
    
  0.504
A0A2T2N9X7
Uncharacterized protein.
    
  0.502
Your Current Organism:
Corynespora cassiicola
NCBI taxonomy Id: 1448308
Other names: C. cassiicola Philippines, Corynespora cassiicola INRA-Clermont Ferrand, Corynespora cassiicola Philippines
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