A0A2T2PCT7 protein (Corynespora cassiicola) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A2T2PCT7

HET-domain-containing protein. (701 aa)

Predicted Functional Partners:

A0A2T2NYW6

0.753

A0A2T2PAI8

0.706

A0A2T2N9M4

0.679

A0A2T2P4V8

0.629

A0A2T2NDC1

0.628

A0A2T2NF49

0.628

A0A2T2PCS0

0.619

A0A2T2N382

0.616

A0A2T2N5V9

0.616

A0A2T2NGA9

0.616

Your Current Organism:

Corynespora cassiicola

NCBI taxonomy Id: 1448308
Other names: C. cassiicola Philippines, Corynespora cassiicola INRA-Clermont Ferrand, Corynespora cassiicola Philippines

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2T2N382	A0A2T2N5V9	60S ribosomal protein L23.	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.999
A0A2T2N382	A0A2T2NDC1	60S ribosomal protein L23.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.973
A0A2T2N382	A0A2T2NF49	60S ribosomal protein L23.	Insert subdomain of RNA polymerase alpha subunit.	0.973
A0A2T2N382	A0A2T2NGA9	60S ribosomal protein L23.	Translation protein.	0.997
A0A2T2N382	A0A2T2NYW6	60S ribosomal protein L23.	Tr-type G domain-containing protein.	0.994
A0A2T2N382	A0A2T2P4V8	60S ribosomal protein L23.	Ribosomal protein L2.	0.995
A0A2T2N382	A0A2T2PAI8	60S ribosomal protein L23.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.949
A0A2T2N382	A0A2T2PCS0	60S ribosomal protein L23.	Ribosomal protein L2.	0.999
A0A2T2N382	A0A2T2PCT7	60S ribosomal protein L23.	HET-domain-containing protein.	0.616
A0A2T2N5V9	A0A2T2N382	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L23.	0.999
A0A2T2N5V9	A0A2T2NDC1	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.940
A0A2T2N5V9	A0A2T2NF49	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Insert subdomain of RNA polymerase alpha subunit.	0.940
A0A2T2N5V9	A0A2T2NGA9	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Translation protein.	0.451
A0A2T2N5V9	A0A2T2NYW6	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Tr-type G domain-containing protein.	0.991
A0A2T2N5V9	A0A2T2P4V8	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L2.	0.986
A0A2T2N5V9	A0A2T2PAI8	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.	0.947
A0A2T2N5V9	A0A2T2PCS0	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L2.	0.999
A0A2T2N5V9	A0A2T2PCT7	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	HET-domain-containing protein.	0.616
A0A2T2N9M4	A0A2T2PCT7	tRNA nucleotidyltransferase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	HET-domain-containing protein.	0.679
A0A2T2NDC1	A0A2T2N382	DNA-directed RNA polymerases I and III subunit RPAC1.	60S ribosomal protein L23.	0.973