ETX29564.1 protein (Roseivivax isoporae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Roseivivax isoporae

NCBI taxonomy Id: 1449351
Other names: R. isoporae LMG 25204, Roseivivax isoporae LMG 25204, Roseivivax isoporae sw-2, Roseivivax sp. sw-2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ETX27772.1	ETX28081.1	RISW2_11265	RISW2_09925	Creatinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	N-methylproline demethylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
ETX27772.1	ETX29560.1	RISW2_11265	RISW2_23775	Creatinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sarcosine oxidase subunit gamma; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.745
ETX27772.1	ETX29561.1	RISW2_11265	RISW2_23780	Creatinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GcvT family.	0.848
ETX27772.1	ETX29562.1	RISW2_11265	RISW2_23785	Creatinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sarcosine oxidase subunit delta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.799
ETX27772.1	ETX29564.1	RISW2_11265	RISW2_23795	Creatinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.798
ETX27772.1	ETX30490.1	RISW2_11265	RISW2_12545	Creatinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GcvT family.	0.756
ETX28081.1	ETX27772.1	RISW2_09925	RISW2_11265	N-methylproline demethylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Creatinase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.747
ETX28081.1	ETX28803.1	RISW2_09925	RISW2_04705	N-methylproline demethylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Septum site-determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.569
ETX28081.1	ETX29108.1	RISW2_09925	RISW2_02770	N-methylproline demethylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.645
ETX28081.1	ETX29560.1	RISW2_09925	RISW2_23775	N-methylproline demethylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sarcosine oxidase subunit gamma; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.963
ETX28081.1	ETX29561.1	RISW2_09925	RISW2_23780	N-methylproline demethylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GcvT family.	0.914
ETX28081.1	ETX29562.1	RISW2_09925	RISW2_23785	N-methylproline demethylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sarcosine oxidase subunit delta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.968
ETX28081.1	ETX29564.1	RISW2_09925	RISW2_23795	N-methylproline demethylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sarcosine oxidase subunit beta; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.857
ETX28081.1	ETX30474.1	RISW2_09925	RISW2_12455	N-methylproline demethylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
ETX28081.1	ETX30490.1	RISW2_09925	RISW2_12545	N-methylproline demethylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GcvT family.	0.956
ETX28081.1	gcvP	RISW2_09925	RISW2_19935	N-methylproline demethylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.	0.900
ETX28803.1	ETX28081.1	RISW2_04705	RISW2_09925	Septum site-determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-methylproline demethylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.569
ETX28803.1	ETX29108.1	RISW2_04705	RISW2_02770	Septum site-determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.685
ETX28803.1	ETX29560.1	RISW2_04705	RISW2_23775	Septum site-determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sarcosine oxidase subunit gamma; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.685
ETX28803.1	ETX29561.1	RISW2_04705	RISW2_23780	Septum site-determining protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sarcosine oxidase subunit alpha; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the GcvT family.	0.721