KALB_1374 protein (Kutzneria albida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KALB_1374

ABC amino acid transporter. (311 aa)

Predicted Functional Partners:

KALB_1372

0.961

KALB_1373

0.954

KALB_3883

0.859

KALB_2231

0.854

KALB_8695

0.853

KALB_6676

0.833

KALB_2233

0.825

KALB_3884

0.803

KALB_8696

0.796

KALB_6677

0.663

Your Current Organism:

Kutzneria albida

NCBI taxonomy Id: 1449976
Other names: K. albida DSM 43870, Kutzneria albida DSM 43870

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
KALB_1372	KALB_1373	Putative ABC transporter permease protein.	Glutamine transport ATP-binding protein GlnQ; Part of the ABC transporter complex GlnHMPQ involved in glutamine transport. Probably responsible for energy coupling to the transport system (By similarity).	0.999
KALB_1372	KALB_1374	Putative ABC transporter permease protein.	ABC amino acid transporter.	0.961
KALB_1372	KALB_2231	Putative ABC transporter permease protein.	ABC-type amino acid transport system, permease component.	0.431
KALB_1372	KALB_2233	Putative ABC transporter permease protein.	GCN5-related N-acetyltransferase.	0.545
KALB_1372	KALB_3884	Putative ABC transporter permease protein.	Putative amino-acid ABC transporter ATP-binding protein YecC; Probably part of a binding-protein-dependent transport system YecCS for an amino acid. Probably responsible for energy coupling to the transport system.	0.978
KALB_1372	KALB_6676	Putative ABC transporter permease protein.	Hypothetical protein.	0.504
KALB_1372	KALB_6677	Putative ABC transporter permease protein.	Hypothetical protein.	0.577
KALB_1372	KALB_8696	Putative ABC transporter permease protein.	Hypothetical protein.	0.963
KALB_1373	KALB_1372	Glutamine transport ATP-binding protein GlnQ; Part of the ABC transporter complex GlnHMPQ involved in glutamine transport. Probably responsible for energy coupling to the transport system (By similarity).	Putative ABC transporter permease protein.	0.999
KALB_1373	KALB_1374	Glutamine transport ATP-binding protein GlnQ; Part of the ABC transporter complex GlnHMPQ involved in glutamine transport. Probably responsible for energy coupling to the transport system (By similarity).	ABC amino acid transporter.	0.954
KALB_1373	KALB_2231	Glutamine transport ATP-binding protein GlnQ; Part of the ABC transporter complex GlnHMPQ involved in glutamine transport. Probably responsible for energy coupling to the transport system (By similarity).	ABC-type amino acid transport system, permease component.	0.986
KALB_1373	KALB_3883	Glutamine transport ATP-binding protein GlnQ; Part of the ABC transporter complex GlnHMPQ involved in glutamine transport. Probably responsible for energy coupling to the transport system (By similarity).	His/Glu/Gln/Arg/opine family amino acid ABC transporter, permease.	0.944
KALB_1373	KALB_6676	Glutamine transport ATP-binding protein GlnQ; Part of the ABC transporter complex GlnHMPQ involved in glutamine transport. Probably responsible for energy coupling to the transport system (By similarity).	Hypothetical protein.	0.921
KALB_1373	KALB_6677	Glutamine transport ATP-binding protein GlnQ; Part of the ABC transporter complex GlnHMPQ involved in glutamine transport. Probably responsible for energy coupling to the transport system (By similarity).	Hypothetical protein.	0.923
KALB_1373	KALB_8695	Glutamine transport ATP-binding protein GlnQ; Part of the ABC transporter complex GlnHMPQ involved in glutamine transport. Probably responsible for energy coupling to the transport system (By similarity).	Hypothetical protein.	0.947
KALB_1374	KALB_1372	ABC amino acid transporter.	Putative ABC transporter permease protein.	0.961
KALB_1374	KALB_1373	ABC amino acid transporter.	Glutamine transport ATP-binding protein GlnQ; Part of the ABC transporter complex GlnHMPQ involved in glutamine transport. Probably responsible for energy coupling to the transport system (By similarity).	0.954
KALB_1374	KALB_2231	ABC amino acid transporter.	ABC-type amino acid transport system, permease component.	0.854
KALB_1374	KALB_2233	ABC amino acid transporter.	GCN5-related N-acetyltransferase.	0.825
KALB_1374	KALB_3883	ABC amino acid transporter.	His/Glu/Gln/Arg/opine family amino acid ABC transporter, permease.	0.859