def protein (Kutzneria albida) - STRING interaction network

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def

Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. (172 aa)

Predicted Functional Partners:

tig

0.885

rplT

0.885

rplU

0.878

rpmA

0.869

rplI

0.869

rplQ

0.863

rplY

0.857

rplX

0.855

rpsT

0.854

rplD

0.854

Your Current Organism:

Kutzneria albida

NCBI taxonomy Id: 1449976
Other names: K. albida DSM 43870, Kutzneria albida DSM 43870

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
def	rplD	KALB_1391	KALB_8222	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	Hypothetical protein; Forms part of the polypeptide exit tunnel.	0.854
def	rplI	KALB_1391	KALB_8762	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	Hypothetical protein; Binds to the 23S rRNA.	0.869
def	rplQ	KALB_1391	KALB_8193	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	Hypothetical protein.	0.863
def	rplT	KALB_1391	KALB_6470	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	Hypothetical protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.885
def	rplU	KALB_1391	KALB_1607	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	Hypothetical protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.878
def	rplX	KALB_1391	KALB_8212	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	Hypothetical protein; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.855
def	rplY	KALB_1391	KALB_787	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	0.857
def	rpmA	KALB_1391	KALB_1608	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	Hypothetical protein; Belongs to the bacterial ribosomal protein bL27 family.	0.869
def	rpsT	KALB_1391	KALB_1636	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	Hypothetical protein; Binds directly to 16S ribosomal RNA.	0.854
def	tig	KALB_1391	KALB_1576	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.	0.885
rplD	def	KALB_8222	KALB_1391	Hypothetical protein; Forms part of the polypeptide exit tunnel.	Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	0.854
rplD	rplI	KALB_8222	KALB_8762	Hypothetical protein; Forms part of the polypeptide exit tunnel.	Hypothetical protein; Binds to the 23S rRNA.	0.998
rplD	rplQ	KALB_8222	KALB_8193	Hypothetical protein; Forms part of the polypeptide exit tunnel.	Hypothetical protein.	0.999
rplD	rplT	KALB_8222	KALB_6470	Hypothetical protein; Forms part of the polypeptide exit tunnel.	Hypothetical protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.999
rplD	rplU	KALB_8222	KALB_1607	Hypothetical protein; Forms part of the polypeptide exit tunnel.	Hypothetical protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.998
rplD	rplX	KALB_8222	KALB_8212	Hypothetical protein; Forms part of the polypeptide exit tunnel.	Hypothetical protein; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.999
rplD	rplY	KALB_8222	KALB_787	Hypothetical protein; Forms part of the polypeptide exit tunnel.	50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.	0.996
rplD	rpmA	KALB_8222	KALB_1608	Hypothetical protein; Forms part of the polypeptide exit tunnel.	Hypothetical protein; Belongs to the bacterial ribosomal protein bL27 family.	0.999
rplD	rpsT	KALB_8222	KALB_1636	Hypothetical protein; Forms part of the polypeptide exit tunnel.	Hypothetical protein; Binds directly to 16S ribosomal RNA.	0.994
rplD	tig	KALB_8222	KALB_1576	Hypothetical protein; Forms part of the polypeptide exit tunnel.	Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.	0.989

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