STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KALB_4922Hypothetical protein. (114 aa)    
Predicted Functional Partners:
KALB_4921
Hypothetical protein.
       0.705
KALB_5011
Hypothetical protein.
  
     0.673
KALB_5977
Hypothetical protein.
  
    0.669
KALB_3379
GntR family transcription regulator.
  
     0.654
KALB_148
Hypothetical protein.
  
     0.652
KALB_6894
Hypothetical protein.
  
     0.635
KALB_3544
GntR family transcription regulator.
  
     0.632
KALB_490
HTH-type transcription repressor dasR; Global regulator that is part of the nutrient-sensing system. In the absence of N-acetylglucosamine 6-P, represses the phosphotransferase system (PTS) specific for the uptake of N- acetylglucosamine (PTSNag), and genes involved in the metabolism of chitin, as well as several genes involved in development, thereby linking carbon availability to morphogenesis. Binds to the DNA consensus sequence 5'-ACTGGTCTAGACCACT-3' (By similarity).
  
     0.628
KALB_1419
GntR family transcription regulator.
  
    0.590
KALB_2722
GntR family transcription regulator.
  
     0.582
Your Current Organism:
Kutzneria albida
NCBI taxonomy Id: 1449976
Other names: K. albida DSM 43870, Kutzneria albida DSM 43870
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.