STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ60561.1Nucleotidyltransferase domain protein. (106 aa)    
Predicted Functional Partners:
OPJ60560.1
HEPN domain protein.
 
   
 0.949
OPJ57340.1
HEPN domain protein.
 
   
 0.784
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
    
  0.760
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
    
  0.755
OPJ60559.1
Helix-turn-helix protein.
       0.539
Your Current Organism:
Clostridium oryzae
NCBI taxonomy Id: 1450648
Other names: C. oryzae, Clostridium oryzae Horino et al. 2015, Clostridium sp. KC3, DSM 28571, NBRC 110163, strain KC3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.