STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ohrB-2Organic hydroperoxide resistance protein OhrA; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)    
Predicted Functional Partners:
ohrR
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.960
mprF
Phosphatidylglycerol lysyltransferase; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms.
      
 0.703
aadK
Aminoglycoside adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.703
tmrB
Tunicamycin resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.703
yflT
General stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.647
AJF86939.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.642
AJF84606.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.478
AJF84607.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.478
AJF84608.1
Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.478
AJF84246.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.467
Your Current Organism:
Bacillus atrophaeus
NCBI taxonomy Id: 1452
Other names: ATCC 49337, B. atrophaeus, Bacillus atriphaeus, Bacillus sp. S2 BC-2, Bacillus subtilis DSM 2277, Bacillus subtilis DSM 675, CCUG 28524, CIP 107159, DSM 7264, IFO 15539, JCM 9070, LMG 16797, LMG:16797, NBRC 15539, NRRL NRS-213
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