STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJF85030.1Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (143 aa)    
Predicted Functional Partners:
speG
Spermidine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.750
AJF84080.1
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.591
AJF83923.1
Alanine acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.495
AJF85025.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.473
AJF84298.1
Ornithine monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.463
pksN
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.456
AJF85031.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.456
AJF87713.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.453
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.434
AJF85028.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.428
Your Current Organism:
Bacillus atrophaeus
NCBI taxonomy Id: 1452
Other names: ATCC 49337, B. atrophaeus, Bacillus atriphaeus, Bacillus sp. S2 BC-2, Bacillus subtilis DSM 2277, Bacillus subtilis DSM 675, CCUG 28524, CIP 107159, DSM 7264, IFO 15539, JCM 9070, LMG 16797, LMG:16797, NBRC 15539, NRRL NRS-213
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