STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK13141.1Fumarylacetoacetate hydrolase family protein. (208 aa)    
Predicted Functional Partners:
AMK14234.1
4Fe-4S dicluster domain-containing protein.
  
 
  0.912
AMK13249.1
Aldehyde dehydrogenase family protein.
  
 0.904
AMK14016.1
Non-ribosomal peptide synthetase.
  
 
 0.869
AMK13140.1
Ribosomal RNA large subunit methyltransferase J RrmJ.
   
   0.803
AMK13243.1
C/D box methylation guide ribonucleoprotein complex aNOP56 subunit.
      0.727
AMK13431.1
2-isopropylmalate synthase/homocitrate synthase family protein.
    
 0.671
AMK13118.1
Bifunctional hexulose-6-phosphate synthase/ribonuclease regulator.
    
 0.657
AMK13181.1
Class V aminotransferase.
   
 
 0.624
AMK13139.1
NADPH-dependent FMN reductase.
       0.566
AMK13412.1
Dihydroorotase PyrC.
   
 0.554
Your Current Organism:
methanogenic archaeon mixed
NCBI taxonomy Id: 1452364
Other names: m. archaeon mixed culture ISO4-G1, methanogenic archaeon mixed culture ISO4-G1
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