STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK13171.1XRE family transcriptional regulator. (169 aa)    
Predicted Functional Partners:
AMK13356.1
Ribosomal protein S3P Rps3p.
  
 
 0.970
AMK13357.1
Ribosomal protein L29P Rpl29p.
  
 
 0.926
AMK14438.1
Ribosomal protein S17e Rps17e.
  
   0.912
AMK13408.1
Ribosomal protein S3Ae Rps3ae.
  
 
 0.901
AMK13371.1
Ribosomal protein S5P Rps5p.
  
   0.899
AMK13354.1
Ribosomal protein S19P Rps19p.
   
   0.898
AMK13293.1
Ribosomal protein L18e Rpl18e.
  
   0.879
AMK14244.1
Ribosomal protein S4P Rps4p.
   
   0.879
AMK14035.1
Ribosomal protein S24e Rps24e.
  
 
 
 0.876
AMK13860.1
Ribosomal protein L31e Rpl31e.
  
   0.871
Your Current Organism:
methanogenic archaeon mixed
NCBI taxonomy Id: 1452364
Other names: m. archaeon mixed culture ISO4-G1, methanogenic archaeon mixed culture ISO4-G1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.