STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK13175.1AMP-binding domain-containing protein. (555 aa)    
Predicted Functional Partners:
AMK13367.1
Ribosomal protein L6P Rpl6p.
    
 0.943
AMK13194.1
Transcription termination factor Tfs.
    
  0.907
AMK14113.1
Hypothetical protein.
    
 0.894
AMK14345.1
PAP2 superfamily protein.
    
 0.894
AMK13213.1
Pyrroline-5-carboxylate reductase ProC.
    
 0.816
AMK14502.1
NAD-dependent epimerase/dehydratase.
  
 0.803
AMK14016.1
Non-ribosomal peptide synthetase.
 
0.771
AMK13249.1
Aldehyde dehydrogenase family protein.
  
 0.764
AMK14506.1
Peptidyl-prolyl cis-trans isomerase.
   
 0.757
AMK13888.1
AMP-binding domain-containing protein.
 
 
0.749
Your Current Organism:
methanogenic archaeon mixed
NCBI taxonomy Id: 1452364
Other names: m. archaeon mixed culture ISO4-G1, methanogenic archaeon mixed culture ISO4-G1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.