STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK13248.1RNA 3'-phosphate cyclase RtcA. (351 aa)    
Predicted Functional Partners:
AMK13243.1
C/D box methylation guide ribonucleoprotein complex aNOP56 subunit.
 
 0.999
AMK14362.1
KH domain-containing protein.
   
 0.997
AMK14510.1
Ribosomal protein S6e Rps6e.
  
 
  0.994
AMK14244.1
Ribosomal protein S4P Rps4p.
   
 0.993
AMK14518.1
Ribosomal protein L7Ae Rpl7ae.
   
 0.990
AMK14243.1
Ribosomal protein S11P Rps11p.
    
  0.989
AMK13187.1
Exosome complex RNA-binding protein Csl4.
  
  0.978
AMK13408.1
Ribosomal protein S3Ae Rps3ae.
  
 
  0.977
AMK13096.1
Acidic ribosomal protein P0 RplPO.
  
 
 0.970
AMK14390.1
Ribosomal protein S15P Rps15p.
    
  0.969
Your Current Organism:
methanogenic archaeon mixed
NCBI taxonomy Id: 1452364
Other names: m. archaeon mixed culture ISO4-G1, methanogenic archaeon mixed culture ISO4-G1
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