STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK13386.1Peptide chain release factor aRF1. (409 aa)    
Predicted Functional Partners:
AMK14079.1
ATPase RIL.
  
 
 0.998
AMK14283.1
Translation elongation factor aEF-1 alpha subunit.
  
 0.993
AMK14447.1
Methyltransferase.
    
 0.946
AMK14378.1
Ribosomal protein L15e Rpl15e.
  
 
 0.916
AMK13387.1
arginyl-tRNA synthetase ArgS.
  
    0.895
AMK14464.1
DNA-directed RNA polymerase subunit B RpoB.
  
 
 0.867
AMK13362.1
Ribosomal protein L24P Rpl24p.
  
  0.865
AMK14463.1
DNA-directed RNA polymerase subunit A' RpoA1.
  
   0.862
AMK13408.1
Ribosomal protein S3Ae Rps3ae.
  
  0.857
AMK14288.1
Translation initiation factor aIF-2 beta subunit.
  
  
 0.845
Your Current Organism:
methanogenic archaeon mixed
NCBI taxonomy Id: 1452364
Other names: m. archaeon mixed culture ISO4-G1, methanogenic archaeon mixed culture ISO4-G1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.