STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK13489.1DNA topoisomerase VI subunit A. (363 aa)    
Predicted Functional Partners:
AMK13490.1
DNA topoisomerase VI subunit B.
 
 0.998
AMK13133.1
DNA gyrase subunit B GyrB.
    
 0.969
AMK13486.1
Molecular chaperone Hsp90 family.
  
 0.966
AMK13262.1
DNA repair and recombination protein RadA.
    
 
 0.757
AMK13323.1
DNA repair and recombination protein RadB.
    
 
 0.756
AMK13649.1
Flap structure-specific endonuclease Fen.
   
 
 0.641
AMK14321.1
DNA helicase.
    
 
 0.620
AMK14040.1
Deoxyhypusine synthase.
     
 0.614
AMK13235.1
Chromosome segregation protein SMC.
   
 
 0.607
AMK13468.1
Hypothetical protein.
   
 0.591
Your Current Organism:
methanogenic archaeon mixed
NCBI taxonomy Id: 1452364
Other names: m. archaeon mixed culture ISO4-G1, methanogenic archaeon mixed culture ISO4-G1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.