STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK13490.1DNA topoisomerase VI subunit B. (675 aa)    
Predicted Functional Partners:
AMK13489.1
DNA topoisomerase VI subunit A.
 
 0.998
AMK13133.1
DNA gyrase subunit B GyrB.
  
 
 0.895
AMK14328.1
Translation initiation factor aIF-2 alpha subunit.
  
 
 
 0.679
AMK13343.1
Ribonuclease HII RnhB.
     
 0.674
AMK13770.1
DNA primase DnaG.
  
   
 0.615
AMK13105.1
DNA primase large subunit.
      
 0.563
AMK13114.1
DNA primase small subunit.
      
 0.563
AMK13262.1
DNA repair and recombination protein RadA.
      
 0.563
AMK13846.1
Replication factor C large subunit.
 
   
 0.540
AMK13491.1
Hypothetical protein.
       0.539
Your Current Organism:
methanogenic archaeon mixed
NCBI taxonomy Id: 1452364
Other names: m. archaeon mixed culture ISO4-G1, methanogenic archaeon mixed culture ISO4-G1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.