STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK13689.1SAM-dependent methyltransferase. (211 aa)    
Predicted Functional Partners:
AMK13371.1
Ribosomal protein S5P Rps5p.
    
 0.833
AMK13261.1
Methyltransferase IGR01177 family.
   
 0.829
AMK14470.1
tRNA methyltransferase.
  
 0.822
AMK13363.1
Ribosomal protein S4e Rps4e.
  
  0.806
AMK13408.1
Ribosomal protein S3Ae Rps3ae.
   
  0.782
AMK14035.1
Ribosomal protein S24e Rps24e.
    
  0.780
AMK14510.1
Ribosomal protein S6e Rps6e.
    
  0.780
AMK13360.1
Ribosomal protein S17P Rps17p.
   
  0.779
AMK14184.1
threonyl-tRNA synthetase ThrS.
    
 0.779
AMK14286.1
Ribosomal protein S12P Rps12p.
   
  0.777
Your Current Organism:
methanogenic archaeon mixed
NCBI taxonomy Id: 1452364
Other names: m. archaeon mixed culture ISO4-G1, methanogenic archaeon mixed culture ISO4-G1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.