STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK13824.1Exodeoxyribonuclease VII small subunit XseB. (80 aa)    
Predicted Functional Partners:
AMK13825.1
Exodeoxyribonuclease VII large subunit XseA.
 
 0.999
AMK14045.1
Hypothetical protein.
   
    0.875
AMK14346.1
Excinuclease ABC subunit A UvrA.
     
 0.615
AMK13173.1
DNA-directed RNA polymerase subunit K RpoK.
     
 0.611
AMK13826.1
Thioesterase family protein.
       0.549
AMK13827.1
Hypothetical protein.
       0.535
AMK13335.1
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A GatA.
  
    0.526
AMK13137.1
Geranylgeranyl pyrophosphate synthase.
  
  
 0.509
AMK13226.1
Geranylgeranyl pyrophosphate synthase.
  
  
 0.509
AMK13324.1
Bifunctional short chain isoprenyl diphosphate synthase IdsA.
  
  
 0.509
Your Current Organism:
methanogenic archaeon mixed
NCBI taxonomy Id: 1452364
Other names: m. archaeon mixed culture ISO4-G1, methanogenic archaeon mixed culture ISO4-G1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.