STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK13904.1Peptidase U32 family. (632 aa)    
Predicted Functional Partners:
AMK13903.1
Hypothetical protein.
       0.668
AMK13832.1
Dihydrodipicolinate reductase DapB.
  
 
  0.605
AMK13706.1
Aspartate-semialdehyde dehydrogenase Asd.
    
  0.582
AMK13902.1
Hypothetical protein.
       0.488
AMK13901.1
Hypothetical protein.
       0.482
AMK13906.1
Type II/IV secretion system protein.
       0.460
AMK13905.1
Hypothetical protein.
       0.454
AMK14424.1
Chorismate synthase AroC.
 
   
 0.439
AMK13931.1
phenylalanyl-tRNA synthetase beta subunit PheT.
 
    0.437
AMK13389.1
Hypothetical protein.
     
 0.424
Your Current Organism:
methanogenic archaeon mixed
NCBI taxonomy Id: 1452364
Other names: m. archaeon mixed culture ISO4-G1, methanogenic archaeon mixed culture ISO4-G1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.