STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK14065.1RNA-binding protein. (147 aa)    
Predicted Functional Partners:
AMK14064.1
Hypothetical protein.
       0.774
AMK13075.1
RNA-binding protein.
  
   
 0.682
AMK13517.1
RNase P subunit RPR2.
  
     0.680
AMK14297.1
Signal recognition particle SRP19 protein.
  
     0.637
AMK13124.1
NMD3 family protein.
  
     0.630
AMK14365.1
DNA-directed RNA polymerase subunit F RpoF.
  
     0.589
AMK13642.1
Ribosomal protein L40e Rpl40e.
  
     0.566
AMK14150.1
Archaeosine tRNA-ribosyltransferase.
 
     0.538
AMK14443.1
Hypothetical protein.
  
     0.537
AMK13352.1
Ribosomal protein L23P Rpl23p.
  
     0.523
Your Current Organism:
methanogenic archaeon mixed
NCBI taxonomy Id: 1452364
Other names: m. archaeon mixed culture ISO4-G1, methanogenic archaeon mixed culture ISO4-G1
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