STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMK14238.1Radical SAM domain-containing protein. (543 aa)    
Predicted Functional Partners:
AMK14236.1
Digeranylgeranylglycerophospholipid reductase.
     
 0.799
AMK14237.1
4Fe-4S binding domain-containing protein.
       0.783
AMK14239.1
Cell surface protein.
       0.533
AMK14235.1
Pyridoxamine 5'-phosphate oxidase family protein.
       0.528
AMK13090.1
Hypothetical protein.
  
     0.512
AMK14240.1
GTP-binding protein.
       0.434
AMK14241.1
DNA polymerase II large subunit.
       0.434
AMK14296.1
Ribosomal protein S8e Rps8e.
  
     0.422
Your Current Organism:
methanogenic archaeon mixed
NCBI taxonomy Id: 1452364
Other names: m. archaeon mixed culture ISO4-G1, methanogenic archaeon mixed culture ISO4-G1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.