AMK14537.1 protein (methanogenic archaeon mixed)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AMK14537.1

Iron ABC transporter ATP-binding protein. (262 aa)

Predicted Functional Partners:

AMK13923.1

0.833

AMK14373.1

0.821

AMK14226.1

0.811

AMK14056.1

0.801

AMK14095.1

0.801

AMK14192.1

0.801

AMK14206.1

0.801

AMK13692.1

0.800

AMK14143.1

0.800

AMK14125.1

0.799

Your Current Organism:

methanogenic archaeon mixed

NCBI taxonomy Id: 1452364
Other names: m. archaeon mixed culture ISO4-G1, methanogenic archaeon mixed culture ISO4-G1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMK13692.1	AMK13923.1	AUP07_0640	AUP07_0876	Iron ABC transporter permease protein.	Iron ABC transporter substrate-binding protein.	0.796
AMK13692.1	AMK14056.1	AUP07_0640	AUP07_1014	Iron ABC transporter permease protein.	Iron ABC transporter substrate-binding protein.	0.819
AMK13692.1	AMK14095.1	AUP07_0640	AUP07_1053	Iron ABC transporter permease protein.	Iron ABC transporter substrate-binding protein.	0.796
AMK13692.1	AMK14192.1	AUP07_0640	AUP07_1151	Iron ABC transporter permease protein.	Iron ABC transporter substrate-binding protein.	0.796
AMK13692.1	AMK14206.1	AUP07_0640	AUP07_1165	Iron ABC transporter permease protein.	Iron ABC transporter substrate-binding protein.	0.796
AMK13692.1	AMK14537.1	AUP07_0640	AUP07_1504	Iron ABC transporter permease protein.	Iron ABC transporter ATP-binding protein.	0.800
AMK13923.1	AMK13692.1	AUP07_0876	AUP07_0640	Iron ABC transporter substrate-binding protein.	Iron ABC transporter permease protein.	0.796
AMK13923.1	AMK14056.1	AUP07_0876	AUP07_1014	Iron ABC transporter substrate-binding protein.	Iron ABC transporter substrate-binding protein.	0.414
AMK13923.1	AMK14125.1	AUP07_0876	AUP07_1084	Iron ABC transporter substrate-binding protein.	Iron ABC transporter permease protein.	0.796
AMK13923.1	AMK14143.1	AUP07_0876	AUP07_1102	Iron ABC transporter substrate-binding protein.	Iron ABC transporter permease protein.	0.796
AMK13923.1	AMK14226.1	AUP07_0876	AUP07_1185	Iron ABC transporter substrate-binding protein.	Iron ABC transporter permease protein.	0.819
AMK13923.1	AMK14373.1	AUP07_0876	AUP07_1336	Iron ABC transporter substrate-binding protein.	Iron ABC transporter permease protein.	0.796
AMK13923.1	AMK14537.1	AUP07_0876	AUP07_1504	Iron ABC transporter substrate-binding protein.	Iron ABC transporter ATP-binding protein.	0.833
AMK14056.1	AMK13692.1	AUP07_1014	AUP07_0640	Iron ABC transporter substrate-binding protein.	Iron ABC transporter permease protein.	0.819
AMK14056.1	AMK13923.1	AUP07_1014	AUP07_0876	Iron ABC transporter substrate-binding protein.	Iron ABC transporter substrate-binding protein.	0.414
AMK14056.1	AMK14125.1	AUP07_1014	AUP07_1084	Iron ABC transporter substrate-binding protein.	Iron ABC transporter permease protein.	0.826
AMK14056.1	AMK14143.1	AUP07_1014	AUP07_1102	Iron ABC transporter substrate-binding protein.	Iron ABC transporter permease protein.	0.796
AMK14056.1	AMK14226.1	AUP07_1014	AUP07_1185	Iron ABC transporter substrate-binding protein.	Iron ABC transporter permease protein.	0.796
AMK14056.1	AMK14373.1	AUP07_1014	AUP07_1336	Iron ABC transporter substrate-binding protein.	Iron ABC transporter permease protein.	0.833
AMK14056.1	AMK14537.1	AUP07_1014	AUP07_1504	Iron ABC transporter substrate-binding protein.	Iron ABC transporter ATP-binding protein.	0.801