ALM07136.1 protein (Sediminicola sp. YIK13) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ALM07136.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (677 aa)

Predicted Functional Partners:

ALM07135.1

0.866

ALM06756.1

0.781

ALM07191.1

0.780

ALM08476.1

0.779

ALM08124.1

0.776

ALM08163.1

0.775

ALM06641.1

0.772

ALM06451.1

0.633

ALM08999.1

0.579

ALM07115.1

0.568

Your Current Organism:

Sediminicola sp. YIK13

NCBI taxonomy Id: 1453352
Other names: S. sp. YIK13

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALM06451.1	ALM07115.1	SB49_00455	SB49_04360	Na(+)-translocating NADH-quinone reductase subunit F; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
ALM06451.1	ALM07136.1	SB49_00455	SB49_04475	Na(+)-translocating NADH-quinone reductase subunit F; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.633
ALM06451.1	ALM08163.1	SB49_00455	SB49_10360	Na(+)-translocating NADH-quinone reductase subunit F; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.474
ALM06451.1	ALM08476.1	SB49_00455	SB49_12125	Na(+)-translocating NADH-quinone reductase subunit F; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
ALM06451.1	ALM08999.1	SB49_00455	SB49_15265	Na(+)-translocating NADH-quinone reductase subunit F; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
ALM06641.1	ALM06756.1	SB49_01570	SB49_02250	Asparagine synthetase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
ALM06641.1	ALM07136.1	SB49_01570	SB49_04475	Asparagine synthetase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
ALM06641.1	ALM07191.1	SB49_01570	SB49_04785	Asparagine synthetase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769
ALM06641.1	ALM08124.1	SB49_01570	SB49_10155	Asparagine synthetase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
ALM06641.1	ALM08163.1	SB49_01570	SB49_10360	Asparagine synthetase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
ALM06641.1	ALM08476.1	SB49_01570	SB49_12125	Asparagine synthetase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
ALM06756.1	ALM06641.1	SB49_02250	SB49_01570	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Asparagine synthetase B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
ALM06756.1	ALM07136.1	SB49_02250	SB49_04475	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.781
ALM06756.1	ALM07191.1	SB49_02250	SB49_04785	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.777
ALM06756.1	ALM08124.1	SB49_02250	SB49_10155	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
ALM06756.1	ALM08163.1	SB49_02250	SB49_10360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
ALM06756.1	ALM08476.1	SB49_02250	SB49_12125	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
ALM07115.1	ALM06451.1	SB49_04360	SB49_00455	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Na(+)-translocating NADH-quinone reductase subunit F; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
ALM07115.1	ALM07136.1	SB49_04360	SB49_04475	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.568
ALM07115.1	ALM08163.1	SB49_04360	SB49_10360	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.462