ALM07326.1 protein (Sediminicola sp. YIK13) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ALM07326.1

Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)

Predicted Functional Partners:

ALM07325.1

0.655

kmo

0.573

ALM09187.1

0.461

ALM06624.1

0.448

ALM08082.1

0.433

ALM08047.1

0.406

Your Current Organism:

Sediminicola sp. YIK13

NCBI taxonomy Id: 1453352
Other names: S. sp. YIK13

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALM06624.1	ALM07326.1	SB49_01460	SB49_05585	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.448
ALM06624.1	ALM08047.1	SB49_01460	SB49_09715	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	hydroxymethylglutaryl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HMG-CoA reductase family.	0.407
ALM07325.1	ALM07326.1	SB49_05580	SB49_05585	Peptidase M42; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
ALM07325.1	ALM09187.1	SB49_05580	SB49_05575	Peptidase M42; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
ALM07326.1	ALM06624.1	SB49_05585	SB49_01460	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.448
ALM07326.1	ALM07325.1	SB49_05585	SB49_05580	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M42; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.655
ALM07326.1	ALM08047.1	SB49_05585	SB49_09715	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	hydroxymethylglutaryl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HMG-CoA reductase family.	0.406
ALM07326.1	ALM08082.1	SB49_05585	SB49_09905	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diphosphomevalonate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
ALM07326.1	ALM09187.1	SB49_05585	SB49_05575	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
ALM07326.1	kmo	SB49_05585	SB49_00590	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.	0.573
ALM08047.1	ALM06624.1	SB49_09715	SB49_01460	hydroxymethylglutaryl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HMG-CoA reductase family.	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.407
ALM08047.1	ALM07326.1	SB49_09715	SB49_05585	hydroxymethylglutaryl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HMG-CoA reductase family.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406
ALM08047.1	ALM08082.1	SB49_09715	SB49_09905	hydroxymethylglutaryl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HMG-CoA reductase family.	Diphosphomevalonate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.859
ALM08047.1	kmo	SB49_09715	SB49_00590	hydroxymethylglutaryl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HMG-CoA reductase family.	Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.	0.704
ALM08082.1	ALM07326.1	SB49_09905	SB49_05585	Diphosphomevalonate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
ALM08082.1	ALM08047.1	SB49_09905	SB49_09715	Diphosphomevalonate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	hydroxymethylglutaryl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HMG-CoA reductase family.	0.859
ALM09187.1	ALM07325.1	SB49_05575	SB49_05580	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M42; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
ALM09187.1	ALM07326.1	SB49_05575	SB49_05585	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
kmo	ALM07326.1	SB49_00590	SB49_05585	Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
kmo	ALM08047.1	SB49_00590	SB49_09715	Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.	hydroxymethylglutaryl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HMG-CoA reductase family.	0.704