STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALM07493.1Septum formation initiator; Derived by automated computational analysis using gene prediction method: Protein Homology. (110 aa)    
Predicted Functional Partners:
ALM09033.1
30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.970
ALM07492.1
Uridine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.820
ALM07494.1
methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.820
ALM07495.1
methylmalonyl-CoA mutase; MDM; functions in conversion of succinate to propionate; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.819
ALM07498.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.730
ALM06836.1
methionyl-tRNA formyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.682
ALM07621.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.680
ALM09320.1
uroporphyrinogen-III synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.644
ALM09026.1
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.626
ALM08531.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.612
Your Current Organism:
Sediminicola sp. YIK13
NCBI taxonomy Id: 1453352
Other names: S. sp. YIK13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.