STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALM08714.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (146 aa)    
Predicted Functional Partners:
ALM07256.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.720
ALM06514.1
DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.678
ALM07849.1
arginyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.663
ALM09340.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.649
ALM08097.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.626
ALM08092.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.586
ALM08011.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.564
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
       0.564
ALM08009.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.542
ALM08712.1
Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.537
Your Current Organism:
Sediminicola sp. YIK13
NCBI taxonomy Id: 1453352
Other names: S. sp. YIK13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.