STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT15_00105Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1497 aa)    
Predicted Functional Partners:
AT15_00110
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.937
AT15_00100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.784
AT15_00115
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.574
AT15_00095
CRISPR-associated protein Cas6; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA).
       0.447
AT15_06555
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.442
AT15_04935
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.408
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
       0.405
Your Current Organism:
Kosmotoga arenicorallina
NCBI taxonomy Id: 1453497
Other names: K. arenicorallina S304, Kosmotoga arenicorallina DSM 22549, Kosmotoga arenicorallina JCM 15790, Kosmotoga arenicorallina S304, Kosmotoga sp. S304
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.