STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT15_08350Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (293 aa)    
Predicted Functional Partners:
AT15_08345
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.550
AT15_08360
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.479
AT15_06700
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.456
ispG
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
       0.454
dxr
1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
  
    0.453
ldh
Lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family.
       0.453
AT15_08355
Response regulator ArlR; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.453
AT15_08320
Fe-S cluster protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.451
rnfA
Electron transporter RnfA; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
  
    0.443
AT15_08330
Peptidase M50; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.439
Your Current Organism:
Kosmotoga arenicorallina
NCBI taxonomy Id: 1453497
Other names: K. arenicorallina S304, Kosmotoga arenicorallina DSM 22549, Kosmotoga arenicorallina JCM 15790, Kosmotoga arenicorallina S304, Kosmotoga sp. S304
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