STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_00265Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (367 aa)    
Predicted Functional Partners:
AT05_00260
Rhomboid family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.800
AT05_07525
Selenocysteine lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.778
hemL
Glutamate-1-semialdehyde aminotransferase; Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AT05_10700
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
    
   0.745
AT05_04765
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.717
AT05_07775
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.687
AT05_04005
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.643
AT05_00255
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.618
mutL
DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
       0.595
AT05_10975
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.589
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.