STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_00295Gh3 auxin-responsive promoter; Derived by automated computational analysis using gene prediction method: Protein Homology. (500 aa)    
Predicted Functional Partners:
AT05_00840
acyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.756
AT05_07995
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.741
AT05_02635
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.721
AT05_03855
Phenylacetic acid degradation protein PaaN; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.711
AT05_00290
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.704
AT05_05435
Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.703
AT05_10190
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.673
AT05_04245
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.655
AT05_00230
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.653
AT05_02265
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.653
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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