STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_00495Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)    
Predicted Functional Partners:
AT05_11415
SRPBCC domain-containing protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     0.817
AT05_01910
Deoxyribodipyrimidine photo-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.690
AT05_00470
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.661
AT05_00475
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.661
AT05_00480
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.661
AT05_00485
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.661
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
       0.661
AT05_00465
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0246 family.
       0.652
AT05_02490
Zinc/iron permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.478
AT05_00455
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.446
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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