STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_00540Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (822 aa)    
Predicted Functional Partners:
AT05_08210
Sodium:solute symporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.795
AT05_05955
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.768
AT05_04110
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.593
AT05_00535
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.547
AT05_00530
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.500
bshC
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BshC family.
 
   
 0.465
AT05_08830
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.461
AT05_09135
ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.454
AT05_08410
Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.448
AT05_11560
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
   
 0.412
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.