STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_00885Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (916 aa)    
Predicted Functional Partners:
AT05_07770
ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.887
AT05_04080
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 0.878
AT05_00890
NADP-dependent aryl-alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.776
AT05_10645
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.640
AT05_03765
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.619
AT05_00895
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.597
AT05_03845
uroporphyrinogen-III synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.574
AT05_08330
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.559
AT05_05195
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.522
AT05_00975
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.494
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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