STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_00900ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (114 aa)    
Predicted Functional Partners:
AT05_00895
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.896
AT05_04455
Copper transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.738
AT05_03010
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.725
AT05_00905
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.556
rplN
50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
    
   0.461
AT05_04490
NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.416
AT05_00885
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.402
AT05_00890
NADP-dependent aryl-alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.402
serC
MFS transporter; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
       0.400
AT05_00915
3-phosphoglycerate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.400
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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