STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_01350Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)    
Predicted Functional Partners:
AT05_01390
Type I restriction endonuclease subunit S; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.651
AT05_01400
Type I restriction enzyme, R subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.597
AT05_01395
N-6 DNA methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.555
AT05_01325
Restriction endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.546
AT05_01340
DEAD/DEAH box helicase; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
    0.541
AT05_01355
4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.446
AT05_01360
Modification methylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.446
AT05_10020
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.411
AT05_01240
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
   0.408
AT05_01315
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.408
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.