STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_02645Fe-S metabolism protein SufE; Derived by automated computational analysis using gene prediction method: Protein Homology. (144 aa)    
Predicted Functional Partners:
AT05_10700
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 0.990
AT05_02640
FeS assembly SUF system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.939
AT05_07525
Selenocysteine lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.890
AT05_02635
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.770
AT05_02625
Phosphoheptose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.746
AT05_02630
Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.746
AT05_09395
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.604
AT05_02675
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.586
AT05_02650
Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.548
AT05_02655
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.548
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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