STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_02770Competence protein ComEA; Derived by automated computational analysis using gene prediction method: Protein Homology. (363 aa)    
Predicted Functional Partners:
AT05_02775
acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.759
rpsU
30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family.
  
    0.628
AT05_02790
RNA polymerase subunit sigma-54; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.572
AT05_02760
Sodium:calcium symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.561
AT05_02755
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
     0.524
xerC-2
Integrase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.518
AT05_10670
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.518
AT05_11480
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.515
AT05_06565
Gliding motility protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.478
AT05_06570
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.463
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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