STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_03105Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (412 aa)    
Predicted Functional Partners:
AT05_03110
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.946
AT05_03115
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.945
AT05_03100
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AT05_05645
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.746
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.656
AT05_00100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.624
AT05_00350
Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.609
AT05_09035
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.588
AT05_04740
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.581
AT05_05280
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.530
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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