STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_03755Biopolymer transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)    
Predicted Functional Partners:
AT05_03760
Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.977
AT05_03745
Cell envelope biogenesis protein TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.966
AT05_03750
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.952
AT05_05220
Flagellar motor protein MotA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.714
AT05_06180
Biopolymer transporter ExbB; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.714
AT05_00560
TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.663
AT05_00565
TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
   0.663
AT05_06170
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.647
AT05_08315
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
   0.647
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
   
 
 0.510
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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