Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 annotation | node2 annotation | score |
| AT05_00560 | AT05_02815 | TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.654 |
| AT05_00560 | AT05_04270 | TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.656 |
| AT05_00560 | AT05_07475 | TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Collagen-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.452 |
| AT05_00565 | AT05_02815 | TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.660 |
| AT05_00565 | AT05_04270 | TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.687 |
| AT05_00565 | AT05_06170 | TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.671 |
| AT05_00565 | AT05_07475 | TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | Collagen-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.437 |
| AT05_02815 | AT05_00560 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.654 |
| AT05_02815 | AT05_00565 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.660 |
| AT05_02815 | AT05_03745 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Cell envelope biogenesis protein TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.782 |
| AT05_02815 | AT05_04270 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.691 |
| AT05_02815 | AT05_06170 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.610 |
| AT05_02815 | AT05_07480 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.788 |
| AT05_02815 | AT05_08315 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.610 |
| AT05_02815 | AT05_08830 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.550 |
| AT05_03745 | AT05_02815 | Cell envelope biogenesis protein TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.782 |
| AT05_03745 | AT05_04270 | Cell envelope biogenesis protein TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. | TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.758 |
| AT05_03745 | AT05_07475 | Cell envelope biogenesis protein TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. | Collagen-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.669 |
| AT05_03745 | AT05_07480 | Cell envelope biogenesis protein TonB; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.489 |
| AT05_04270 | AT05_00560 | TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. | TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. | 0.656 |
page 1 of 3