STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AT05_04360Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (309 aa)    
Predicted Functional Partners:
AT05_04355
Hypothetical protein; Involved in DNA repair and RecF pathway recombination.
       0.773
AT05_04365
Saccharopine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
AT05_04370
Aminotransferase class III; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.742
AT05_11390
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
  0.614
AT05_10225
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.495
AT05_05120
Gliding motility protein GldA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.492
AT05_10260
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.492
AT05_04350
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.447
AT05_06570
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.436
AT05_09610
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.405
Your Current Organism:
Schleiferia thermophila
NCBI taxonomy Id: 1453500
Other names: S. thermophila str. Yellowstone, Schleiferia thermophila str. Yellowstone
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.